Koopman won the ECHO Klassik Award, for Buxtehude,Opera Omnia, Vocal Works III (CC72246). Koopman won the Editor's Choice in Gramophone (september 2009) for Opera Omnia X- Organ Works, Vol.5 (CC72249).

In 2008 Ton Koopman won the BBC Music Award for part 22 of the Bach-Cantata series. The jury says: ‘….with superb control of style and technique.’ Ton Koopman received an Edison for the entire Bach Cantata-series. In 2010, around Easter, Ton Koopman received a Golden Record for selling more than 10.000 records of the Matthäus Passion (J.S. Bach).